m. shamsollahi

 Suboptimal levels of kid survival are the largest contributor to reproductive wastage in goat flocks. This results in substantial loss of production, producer, and industry income, and is increasingly being perceived as poor animal welfare. Improving kid survival is therefore a priority for the industry. Nutrient provision during gestation not only affects maternal status and reproductive performance but also affects prenatal and postnatal offspring growth and health. Although trace minerals (TM) are needed by the body in small amounts, they are essential nutrients for several metabolic functions such as growth, development, reproduction, and immunity. Furthermore, newborn animals are dependent upon their dams for the transfer of these nutrients via the placenta and the mammary gland. The antibodies obtained from colostrum are the only defense mechanism against environmental factors in neonatal ruminants. Inadequate nutrition of the dam, immune system suppression, and stress factors may lead to the production of low-quality colostrum. Management and feeding of high-quality colostrum can reduce kid mortality, strengthen immunity, and increase animal life span. Nutrition affects the development of the mammary gland, the onset of lactogenesis, and colostrum production, either by affecting some of the hormones that control these processes or by contributing nutrients that are in demand at this stage of pregnancy. Selenium plays an important role in preventing impaired function of the immune response. Copper deficiency has been shown to result in lowered bactericidal activities of blood leukocytes in ruminant animals. Zinc sufficiency has also been linked to proper immune functions. Therefore, this study aimed to investigate the effect of TM injection in late pregnancy on colostrum quality and plasma metabolites of Lori does and their kids.
Thirty Lori mature does with an average body weight of 40 kg and an age of 2-3 years were used. One month before the expected kidding, animals were divided into two groups (n=15 does/group) and randomly assigned to experimental treatments. Experimental treatments were no injection of trace minerals (Control; C) and injection of 1 mL of TM at four and two weeks before expected kidding. Blood samples were taken through the jugular vein. Each mL of TM solution contained 2.5 mg of Cu, 1.25 mg of Se, 5 mg of Mn, and 5 mg of Zn. All does were kept in similar nutritional and managerial conditions from mating to one month before kidding.
Results showed that plasma concentrations of glucose and total cholesterol (TC) tended to be higher and lower in the TM group at day 7 before kidding, respectively (P=0.06). Experimental treatments did not affect plasma triglyceride (TG), Ca, and Mg concentrations, and glutathione peroxidase (GPX) activity of does at day 7 before kidding (P>0.05). Whereas, TM injection before mating decreased plasma malondialdehyde (MDA) and increased total protein (TP), BRIX index (BI), superoxide dismutase (SOD), and total antioxidant activity at day 7 before kidding (P<0.05). Colostrum of does received TM had a higher fat, protein, and BI content and a lower lactose content than the colostrum of the C group (P<0.05). Plasma concentrations of glucose and MDA were lower in kids born from does received TM than those born from the C group (P<0.05). Experimental treatments did not affect plasma concentrations of TC, Ca, and Mg concentrations in kids (P>0.05). Kids born from does received TM had higher plasma concentrations of TG, TP, BI and SOD, GPX, and total antioxidant activity than those of the C group (P<0.05).
According to the results of the present experiment, injection of a TM solution containing Cu, Zn, Se, and Mn four and two weeks before birth increased the concentrations of TP and BI as well as the activity of antioxidant enzymes (SOD, GPX) and antioxidant capacity and reduced MDA concentration in Lori goat plasma. This improved the quality of colostrum produced by these does. Kids born from does receiving trace minerals had higher plasma concentrations of TP, BI, and activity of antioxidant enzymes (SOD, GPX), higher total antioxidant capacity, and lower concentrations of MDA compared to the C group. Therefore, this strategy may have beneficial effects on the health, viability, and performance of kids before weaning.

Birth weight is the most important factor affecting lamb survival, but even when birth weight is appropriate, some lambs are lost to weaning. Infectious diseases are the most important factors affecting the mortality of lambs before weaning. Therefore, any factor that reduces the prevalence of these infections has a positive effect on the survival of lambs and improves the reproductive performance of the flock. The structure of the placenta in ruminant animals prevents the transfer of immunoglobulins from maternal circulation to the fetus. Therefore, newborn ruminants are completely dependent on the absorption of immunoglobulins from the mother's colostrum after birth. Consuming a sufficient amount of high-quality colostrum at the right time is the most important management factor affecting the survival and health of newborn ruminants. Colostrum also affects the survival of lambs by providing nutrients necessary for metabolism and heat production. Fat-soluble vitamins (A, D3, and E) are among the important components of colostrum and their concentrations are higher in colostrum compared to milk. These vitamins play an important role in improving the immune system of ruminant animals. Many genetic and non-genetic factors such as animal breed, mother's age, nutrition of dam in late pregnancy, herd vaccination program, colostrum volume, and colostrum collection time after parturition affect the quantity and quality of colostrum in ruminant animals. Nutrition status in late pregnancy is the most important factor affecting the quantity and quality of colostrum produced in these animals. Therefore, an insufficient supply of vitamins in pregnant ewes is one of the reasons for reducing the survival and mortality of newborn lambs. Much research has been conducted regarding the effect of dietary or injectable vitamin A, D3, and E supplements in late pregnancy on the maternal immune system and the survival of newborn ruminants, although, they have mainly focused on vitamin E and selenium supplements. To our knowledge, there is no information on how the timing of the use of these vitamins in late pregnancy affects the metabolic responses of ruminants. Therefore, this experiment aimed to investigate the effect of time and amount of vitamin AD3E injection in late pregnancy on colostrum quality and plasma metabolites of Afshari ewes and their lambs. Forty Afshari mature ewes with an average of 45 kg and 2-3 years of age were used. One month before the expected lambing, animals were divided into four groups and randomly assigned to experimental treatments. Experimental treatments were: 1. No injection of vitamin AD3E (Control; C), 2. Injection of 10 mL of vitamin AD3E four weeks before the expected lambing, 3. Injection of 10 mL of vitamin AD3E two weeks before the expected lambing, and 4. Injection of five mL of vitamin AD3E four weeks and five mL two weeks before the expected lambing. Blood samples of ewes and lambs were collected four and one week before the expected lambing and three days after colostrum consumption, respectively. Plasma was separated and stored at -20 ◦C for metabolites’ measurement. Samples of colostrum from all animals were collected and stored at 3-5 ◦C for determining chemical composition and BRIX index. Results showed that the greatest plasma concentrations of glucose and malondialdehyde (MDA) on day 7 before lambing were observed in ewes of the C groups (P<0.05). Experimental treatments did not affect plasma total cholesterol (TCh), triglyceride (TG), and magnesium (Mg) concentrations of ewes on day 7 before lambing (P>0.05). Plasma concentration of total protein (TP), calcium (Ca), and BRIX index on day 7 before lambing were higher in ewes who received vitamin AD3E compared to the C group (P<0.05). Ewes received 10 mL of vitamin AD3E two weeks before the expected lambing had the highest plasma glutathione peroxidase (GPX), superoxide dismutase (SOD), and total antioxidant activities on day 7 before lambing (P<0.05). Colostrum fat and lactose percentage were not influenced by experimental treatments (P>0.05). Whereas, colostrum protein percentage tended to be lower for ewes in the C group (P=0.08). The lowest colostrum BRIX index was observed in the ewes of the C group (P<0.05). The lowest plasma glucose concentration was observed in lambs born from ewes of the C group (P<0.05). Experimental treatments did not affect plasma TCh, TG, Ca, and Mg concentrations of lambs (P>0.05). Lambs born from ewes received 10 mL of vitamin AD3E two weeks before lambing had the highest plasma GPX, SOD, and total antioxidant activities compared to other groups (P<0.05). Vitamin AD3E injection increased the plasma BRIX index of lambs compared to the group without injection (P<0.05). The results showed that injection of vitamin AD3E two weeks before lambing increased plasma TP concentration and antioxidant activity of ewes, as well as colostrum TP content, and consequently increased plasma TP concentration and antioxidant activity of lambs. Therefore, this can be an effective strategy to improve lamb survival and performance.

Obstructive gastrointestinal (GI) malformations are one of the most important congenital problems resulting in calf mortality within a few days of birth. The most common site for atresia, after the esophagus, is the jejunum. Jejunum atresia is the congenital absence or complete blockage of a part of the jejunum lumen. Early detection of intestinal obstruction is essential to prevent further complications. Intestinal atresia is an underdiagnosed congenital defect in cattle. It results in complete occlusion of the intestinal lumen and, unless surgically corrected, results in death or euthanasia of the affected calf. There is limited information on the incidence of this condition or risk factors, including predisposing alleles, associated with the defect. Atresia is a well-known congenital defect of the gastrointestinal system in calves and investigations into the etiology of this condition are warranted. Domestication and selection have significantly changed the behavioral and phenotypic traits in modern domestic animals. The selection of animals by humans left detectable signatures on the genome of modern dairy cattle. The identification of these signals can help us to improve the genetic characteristics of economically important traits in goats. Over the last decade, interest in the detection of genes or genomic regions that are targeted by selection has been growing. Identifying signatures of selection can provide valuable insights about the genes or genomic regions that are or have been under selection pressure, which in turn leads to a better understanding of genotype-phenotype relationships. This study aimed to identify the selection signatures using the unbiased theta method associated with gastrointestinal atresia in Holstein dairy calves.

For calves with intestinal atresia, muscle tissue (>1 g) was collected from the Latissimus dorsi muscle postmortem, and submerged in RNA later solution. DNA samples from 91 atresia cases and 377 control animals were genotyped using the Illumina 777K BovineHD beadchip (Illumina Inc). The work described here is a case–control association study. Single nucleotide polymorphism (SNP) missing 5% of data, with MAF of <1% and Hardy–Weinberg equilibrium P-values <10−6 were removed. The genotyping efficiency for samples was also verified, and samples with more than 5% missing data were removed. Grouping was done to infer selection signatures based on FST statistic. The bioinformatics investigations were carried out using the Ensembl database for bovine genes (assembly ARS-UCD1.2), to identify potential candidate genes which already have been reported in/or surrounding genomic regions containing the peak of absolute extreme FST values. The regions corresponding to the upper and lower 0.01% of positive and negative obtained FST scores were considered regions under selection. Genes within a 500-kb span of the start and end of the QTL were identified using Ensembl 108 on the ARS-UCD1.2 bovine genome assembly implemented in biomart. Then, using the PANTHER database, the general biological function of the genes was checked. At this stage, it is assumed that genes that belong to a functional class can be considered as a group of genes that have some specific and common characteristics, and the quantitative trait loci (QTLs) in the selected region were extracted using the Animalgenome database, and the genes were compared with other researches. GeneCards (http://www.genecards.org) and UniProtKB (http://www.uniprot.org) databases were also used to interpret the function of the obtained genes.

with a 99.90 percentile threshold of the obtained theta (θ) values, eight genomic regions on chromosomes 7, 12, 13, 21, 22, 23 (two regions), and 29 in the Holstein calves were identified. Further investigation using bioinformatics tools showed these genomic regions overlapped with the genes (CSF2, SIAH3, TMEM14A, and SKIV2L) associated with embryonic development, small intestine length, apoptosis, and several tumors. The population used in our study is small, owing to the challenge of collecting a substantial amount of blood on calves on commercial herds having received the diagnosis of gastrointestinal atresia and ready to be culled. Diagnosis and culling of gastrointestinal atresia animals are ineffective preventive measures.  Further work is required to identify which farm-specific or management risk factors contribute to the incidence of intestinal atresia.

The results of this study may provide an important source to facilitate the identification of genomic regions and then, the genes affecting gastrointestinal atresia in claves. However, further studies are warranted to refine the findings using a larger sample size, whole-genome sequencing, and/or high-density genotyping.